Molecule sandbox · Windows · v0.5.0

Chemistry that isn’t scripted.

Build molecules out of atoms, and watch bonds form and break on their own.

drag to rotate

Valence 0.5.0 compared with measurement
Water Valence 0.5.0 Measured
Angle 105.0° 104.5°
O–H 1.003 Å 0.958 Å +4.7 %
Charge on O −0.55 e computed

Drawn live at the shape Valence 0.5.0 computes.

Five scales in 0.5.0

From a drop of liquid down to a quark.

Scroll to zoom. Drawn live in your browser; new work goes into the molecules.

  1. Bulk matter
  2. Molecules
  3. Atom
  4. Nucleus
  5. Quarks

01 / 05 ~10 nm

Bulk matter

Liquids and gases as atoms in motion. This box is a real simulation running in your browser.

02 / 05 ~1 nm

Molecules in development

The sandbox: atoms competing for partners.

03 / 05 ~100 pm

Atom

Electrons as clouds of probability, never as balls on orbits.

04 / 05 ~10 fm

Nucleus

Six protons and six neutrons: the heart of a carbon atom.

05 / 05 ~1 fm

Quarks

Inside one proton: three quarks bound by the strong force.

How it works

Every atom has a valence.

Atoms compete for bonding partners. Molecules are what that competition settles into.

01

Bonds form and break on their own

Reactions happen when the physics allows them.

02

Shapes aren’t looked up

Water bends and methane turns tetrahedral because of their electrons.

03

Every number is labelled

Each result says how far it is from measurement.

  • Drag and shoot atoms
  • Build molecules atom by atom
  • Heat them up
  • Make ions
  • Save and pick up where you left off

Measured, not assumed

Checked against real molecules, misses included.

2.5%

average bond-length error against measured molecules

1,414

automated tests passing

0

molecules or reactions written into the code

The numbers, and what comes next

Who’s building it

One founder, and Claude.

Built by Arda Yıldız, with Claude (Anthropic’s model, in Claude Code) as the main engineer. About the project

Try it early. Tell us where it’s wrong.

Write to Arda

Send a message